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2017  2016

2015

2014

2013

2012

2011

2010

2009

2008

 

2017

 

2016


2015

Harris KA, Bobay BG, Sarachan KL, Sims AF, Bilbille Y, Deutsch C, Iwata-Reuyl D, Agris PF. NMR-based Structural Analysis of Threonylcarbamoyl-AMP Synthase and Its Substrate Interactions. J Biol Chem. 2015 Aug 14;290(33):20032-43. doi: 10.1074/jbc.M114.631242. Epub 2015 Jun 9. PubMed PMID: 26060251; PubMed Central PMCID: PMC4536411.


2014

Olson AL, Tucker AT, Bobay BG, Soderblom EJ, Moseley MA, Thompson RJ, Cavanagh J. Structure and DNA-binding traits of the transition state regulator AbrB. Structure. 2014 Nov 4;22(11):1650-6. doi: 10.1016/j.str.2014.08.018. Epub 2014 Oct 9. PubMed PMID: 25308864; PubMed Central PMCID: PMC4252516.

Tucker AT, Bobay BG, Banse AV, Olson AL, Soderblom EJ, Moseley MA, Thompson RJ, Varney KM, Losick R, Cavanagh J. A DNA mimic: the structure and mechanism of action for the anti-repressor protein AbbA. J Mol Biol. 2014 May 1;426(9):1911-24. doi: 10.1016/j.jmb.2014.02.010. Epub 2014 Feb 15. PubMed PMID: 24534728; PubMed Central PMCID: PMC4017629.

Bobay BG, Thompson RJ, Milton DL, Cavanagh J. Chemical shift assignments and secondary structure prediction of the phosphorelay protein VanU from Vibrio
anguillarum. Biomol NMR Assign. 2014 Apr;8(1):177-9. doi:10.1007/s12104-013-9478-2. Epub 2013 Apr 21. PubMed PMID: 23604692; PubMed Central PMCID: PMC3770736.

Stowe SD, Olson AL, Losick R, Cavanagh J. Chemical shift assignments and secondary structure prediction of the master biofilm regulator, SinR, from
Bacillus subtilis. Biomol NMR Assign. 2014 Apr;8(1):155-8. doi: 10.1007/s12104-013-9473-7. Epub 2013 Mar 10. PubMed PMID: 23475644; PubMed Central PMCID: PMC3739994.

De la Cruz FB, Yelle DJ, Gracz HS, Barlaz MA. Chemical changes during anaerobic decomposition of hardwood, softwood, and old newsprint under mesophilic and thermophilic conditions. J Agric Food Chem. 2014 Jul 9;62(27):6362-74. doi: 10.1021/jf501653h. Epub 2014 Jun 26. PubMed PMID: 24967726.


2013


2012

Cantara WA, Bilbille Y, Kim J, Kaiser R, Leszczy?ska G, Malkiewicz A, Agris PF. Modifications modulate anticodon loop dynamics and codon recognition of E. coli tRNA(Arg1,2). J Mol Biol. 2012 Mar 2;416(4):579-97. doi: 10.1016/j.jmb.2011.12.054. Epub 2012 Jan 3. PubMed PMID: 22240457.

Franzen S, Sasan K, Sturgeon BE, Lyon BJ, Battenburg BJ, Gracz H, Dumariah R, Ghiladi R. Nonphotochemical base-catalyzed hydroxylation of 2,6-dichloroquinone by H2O2 occurs by a radical mechanism. J Phys Chem B. 2012 Feb 9;116(5):1666-76. doi: 10.1021/jp208536x. Epub 2012 Jan 25. PubMed PMID: 22148284.

Olson AL, Thompson RJ, Melander C, Cavanagh J. Chemical shift assignments and secondary structure prediction of the C-terminal domain of the response regulator BfmR from Acinetobacter baumannii. Biomol NMR Assign. 2014 Apr;8(1):67-70. doi: 10.1007/s12104-012-9454-2. Epub 2012 Dec 21. PubMed PMID: 23264007; PubMed Central PMCID: PMC3620908.

Vendeix FA, Murphy FV 4th, Cantara WA, Leszczy?ska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF. Human tRNA(Lys3)(UUU) is pre-structured by natural modifications for cognate and wobble codon binding through keto-enol tautomerism. J Mol Biol. 2012 Mar 2;416(4):467-85. doi: 10.1016/j.jmb.2011.12.048. Epub 2011 Dec 29. PubMed PMID: 22227389; PubMed Central PMCID: PMC3662832.

Bobay BG, Stewart AL, Tucker AT, Thompson RJ, Varney KM, Cavanagh J. Structural insights into the calcium-dependent interaction between calbindin-D28K and caspase-3. FEBS Lett. 2012 Oct 19;586(20):3582-9. doi: 10.1016/j.febslet.2012.08.032. Epub 2012 Sep 13. PubMed PMID: 22982862.


2011

Bilbille Y, Gustilo EM, Harris KA, Jones CN, Lusic H, Kaiser RJ, Delaney MO, Spremulli LL, Deiters A, Agris PF. The human mitochondrial tRNAMet: structure/function relationship of a unique modification in the decoding of unconventional codons. J Mol Biol. 2011 Feb 18;406(2):257-74. doi: 10.1016/j.jmb.2010.11.042. Epub 2010 Dec 17. PubMed PMID: 21168417; PubMed Central PMCID: PMC3662834.

Harris KA, Jones V, Bilbille Y, Swairjo MA, Agris PF. YrdC exhibits properties expected of a subunit for a tRNA threonylcarbamoyl transferase. RNA. 2011 Sep;17(9):1678-87. doi: 10.1261/rna.2592411. Epub 2011 Jul 20. PubMed PMID: 21775474; PubMed Central PMCID: PMC3162333.

D'Antonio EL, D'Antonio J, de Serrano V, Gracz H, Thompson MK, Ghiladi RA, Bowden EF, Franzen S. Functional consequences of the creation of an Asp-His-Fe triad in a 3/3 globin. Biochemistry. 2011 Nov 8;50(44):9664-80. doi: 10.1021/bi201368u. Epub 2011 Oct 13. PubMed PMID: 21950839; PubMed Central PMCID: PMC4007314.

Feese E, Sadeghifar H, Gracz HS, Argyropoulos DS, Ghiladi RA. Photobactericidal porphyrin-cellulose nanocrystals: synthesis, characterization, and antimicrobial properties. Biomacromolecules. 2011 Oct 10;12(10):3528-39. doi: 10.1021/bm200718s. Epub 2011 Sep 16. PubMed PMID: 21838250.

Olson AL, Bobay BG, Melander C, Cavanagh J. ¹H, ¹³C, and ¹?N resonance assignments and secondary structure prediction of the full-length transition state regulator AbrB from Bacillus anthracis. Biomol NMR Assign. 2012 Apr;6(1):95-8. doi: 10.1007/s12104-011-9333-2. Epub 2011 Aug 4. PubMed PMID: 21845362; PubMed Central PMCID: PMC3428226.

Balakshin M, Capanema E, Gracz H, Chang HM, Jameel H. Quantification of lignin-carbohydrate linkages with high-resolution NMR spectroscopy. Planta. 2011 Jun;233(6):1097-110. doi: 10.1007/s00425-011-1359-2. Epub 2011 Feb 5. PubMed PMID: 21298285.


2010

Scheunemann AE, Graham WD, Vendeix FA, Agris PF. Binding of aminoglycoside antibiotics to helix 69 of 23S rRNA. Nucleic Acids Res. 2010 May;38(9):3094-105. doi: 10.1093/nar/gkp1253. Epub 2010 Jan 27. PubMed PMID: 20110260; PubMed Central PMCID: PMC2875026.

Bobay BG, Thompson RJ, Hoch JA, Cavanagh J. Long range dynamic effects of point-mutations trap a response regulator in an active conformation. FEBS Lett. 2010 Oct 8;584(19):4203-7. doi: 10.1016/j.febslet.2010.08.051. Epub 2010 Sep 7. PubMed PMID: 20828564; PubMed Central PMCID: PMC2949504.

Hobbs CA, Bobay BG, Thompson RJ, Perego M, Cavanagh J. NMR solution structure and DNA-binding model of the DNA-binding domain of competence protein A. J Mol Biol. 2010 Apr 30;398(2):248-63. doi: 10.1016/j.jmb.2010.03.003. Epub 2010 Mar 17. PubMed PMID: 20302877; PubMed Central PMCID: PMC2855743.

Davis MF, Bobay BG, Franzen S. Determination of separate inhibitor and substrate binding sites in the dehaloperoxidase-hemoglobin from Amphitrite ornata. Biochemistry. 2010 Feb 16;49(6):1199-206. doi: 10.1021/bi9018576. PubMed PMID: 20067301.


2009

Bilbille Y, Vendeix FA, Guenther R, Malkiewicz A, Ariza X, Vilarrasa J, Agris PF. The structure of the human tRNALys3 anticodon bound to the HIV genome is stabilized by modified nucleosides and adjacent mismatch base pairs. Nucleic Acids Res. 2009 Jun;37(10):3342-53. doi: 10.1093/nar/gkp187. Epub 2009 Mar 26. PubMed PMID: 19324888; PubMed Central PMCID: PMC2691828.

Davis MF, Gracz H, Vendeix FA, de Serrano V, Somasundaram A, Decatur SM, Franzen S. Different modes of binding of mono-, di-, and trihalogenated phenols to the hemoglobin dehaloperoxidase from Amphitrite ornata. Biochemistry. 2009 Mar 17;48(10):2164-72. doi: 10.1021/bi801568s. PubMed PMID: 19228049.


2008

Lusic H, Gustilo EM, Vendeix FA, Kaiser R, Delaney MO, Graham WD, Moye VA, Cantara WA, Agris PF, Deiters A. Synthesis and investigation of the 5-formylcytidine modified, anticodon stem and loop of the human mitochondrial tRNAMet. Nucleic Acids Res. 2008 Nov;36(20):6548-57. doi: 10.1093/nar/gkn703. Epub 2008 Oct 16. PubMed PMID: 18927116; PubMed Central PMCID: PMC2582600.

Whang HS, Vendeix FA, Gracz HS, Gadsby J, Tonelli A. NMR studies of the inclusion complex of cloprostenol sodium salt with beta-cyclodextrin in aqueous solution. Pharm Res. 2008 May;25(5):1142-9. Epub 2007 Dec 5. PubMed PMID: 18064541.

Sullivan DM, Bobay BG, Kojetin DJ, Thompson RJ, Rance M, Strauch MA, Cavanagh J. Insights into the nature of DNA binding of AbrB-like transcription factors. Structure. 2008 Nov 12;16(11):1702-13. doi: 10.1016/j.str.2008.08.014. PubMed PMID: 19000822; PubMed Central PMCID: PMC2606041.

Vendeix FA, Dziergowska A, Gustilo EM, Graham WD, Sproat B, Malkiewicz A, Agris PF. Anticodon domain modifications contribute order to tRNA for ribosome-mediated codon binding. Biochemistry. 2008 Jun 10;47(23):6117-29. doi: 10.1021/bi702356j. Epub 2008 May 13. PubMed PMID: 18473483.